Tutorial

• Run CCCI
  • Running
    • (1) Stringent
    • (2) non-stringent
    • (3) With no regard for the downstream path
  • Results
• Sub-clustering and LRP weight plot
  • Prepare args for sub-clustering
  • Training GNN for sub-clustering
  • Plot results
• Plot
  • Read adata
  • (1) Cell-cell interaction
    • A. Network plot
    • B. Chord plot
    • C. Heatmap
  • (2) Ligand-receptor interaction
    • A. Network plot
    • B. Chord plot
    • C. Dotplot
  • (3) Others
    • A. Spatial radar plot
    • B. Distance network plot
    • C. Pathway enrichemnt